cell counter wont intialise for me on hyperstacks with more than 1 channel

Posted by Michael Cundell on Sep 27, 2008; 8:49pm
URL: http://imagej.273.s1.nabble.com/cell-counter-wont-intialise-for-me-on-hyperstacks-with-more-than-1-channel-tp3694950.html

Hi,

I have an image consisting of 63 Z sections that i converted to a
hyperstack with 3 channels 21 Z's using the order xyzct.  I would very
much like to use the cell counter plugin with this hypersack.  I installed
the latest cell counter plugin which i got from:
http://rsbweb.nih.gov/ij/plugins/cell-counter.html

The info on this page says that it works with hyperstacks.  However,
everytime i hit intialize it doesnt do anything.  It appears to be if you
have more than one channel in your hyperstack as a single channel
hyperstack will intiailise fine and then allow you to count.

Am i doing something wrong or does the counter not work with mutliple
channel hyperstacks?

Many thanks

Michael