Re: cell counter wont intialise for me on hyperstacks with more than 1 channel

Posted by Wayne Rasband on Sep 28, 2008; 3:49pm
URL: http://imagej.273.s1.nabble.com/cell-counter-wont-intialise-for-me-on-hyperstacks-with-more-than-1-channel-tp3694950p3694952.html

On Sep 27, 2008, at 4:49 PM, Michael Cundell wrote:

> Hi,
>
> I have an image consisting of 63 Z sections that i converted to a
> hyperstack with 3 channels 21 Z's using the order xyzct.  I would very
> much like to use the cell counter plugin with this hypersack.  I  
> installed
> the latest cell counter plugin which i got from:
> http://rsbweb.nih.gov/ij/plugins/cell-counter.html
>
> The info on this page says that it works with hyperstacks.  However,
> everytime i hit intialize it doesnt do anything.  It appears to be  
> if you
> have more than one channel in your hyperstack as a single channel
> hyperstack will intiailise fine and then allow you to count.
>
> Am i doing something wrong or does the counter not work with mutliple
> channel hyperstacks?

The Cell Counter plugin will work with multi-channel hyperstacks if  
you use the Plugins>Utilities>Update ImageJ command to upgrade to  
ImageJ 1.41m.

-wayne