Re: Cell Counter plugin with a modification?

Posted by H=?ISO-8859-1?Q?=E5kan?= Toresson on Aug 29, 2008; 7:19am
URL: http://imagej.273.s1.nabble.com/Object-Image-successor-tp3695259p3695264.html

Thanks Wayne, this makes the cell counter more useful for my  
purposes.//Hakan


27 aug 2008 kl. 18.10 skrev Wayne Rasband:

> On Aug 25, 2008, at 3:26 PM, Bill Mohler wrote:
>
>> I think I've found the line(s) of code that would need to be  
>> changed to allow this toggle behavior:  In File  
>> CellCntrImageCanvas.java, within class imageWithMarkers, is an "if  
>> (m.getZ()==img.getCurrentSlice()){" statement.  It seems the logic  
>> of that statement and the following lines of code that govern  
>> display would be all that need to be changed to effect the  
>> toggling display-all/display-in-slice behavior.
>
> There is a new version of the Cell Counter at
>
>     http://rsbweb.nih.gov/ij/plugins/cell-counter.html
>
> that adds a "Show All" checkbox. This version also works with  
> hyperstacks and composite color images.
>
> -wayne
>
>> Bill
>>
>>> I have been recently using the Cell Counter plugin written by  
>>> Kurt de Vos.  A very useful utility.
>>>
>>> As I'm working with densely populated 3D stacks, it would  
>>> actually be useful if I could toggle the display such that every  
>>> cell marker is displayed (and not only those that are in the  
>>> current section). Being able to interchangeably see all markers  
>>> in the volume or only those in the current section would enhance  
>>> my ability to account for objects that extend through several  
>>> sections.
>>>
>>> I haven't seen the option in the plugin dialog/control panel, and  
>>> I wonder if it already exists or could be easily added.  Let me  
>>> know if this request is unclear, and I can explain further.
>>>
>>> Bill
>>> --
>>> -----------------
>>> William A. Mohler
>>> Associate Professor
>>> Dept. of Genetics and Developmental Biology
>>> University of Connecticut Health Center
>>> MC-3301
>>> 263 Farmington Ave.
>>> Farmington, CT   06030-3301
>>>
>>> [hidden email]
>>> Mobile: [phone]
>>>
>>> Office: [phone], room E2056
>>> Lab: [phone], room E2052
>>> Fax: [phone]
>>>
>>> G&DB dept. ofc.: [phone]
>>> G&DB dept. fax : [phone]
>>> http://genetics.uchc.edu/Faculty/Mohler/Mohler.html
>>