Posted by
Joel Sheffield on
Jun 20, 2008; 4:06pm
URL: http://imagej.273.s1.nabble.com/Problem-opening-Leica-SP1-lei-file-tp3695642p3695646.html
Actually, I have been using some plugins that were developed
by Tony Collins some time ago. I don't know if they are
included in the macphotonics set or not. However, these are
the ones that are not working for me, with precisely the error
that Mike described.
Joel
---- Original message ----
>Date: Fri, 20 Jun 2008 15:17:15 +0100
>From: Curtis Rueden <
[hidden email]>
>Subject: Re: Problem opening Leica SP1 .lei file
>To:
[hidden email]
>
>Hi,
>
>I am not sure, but I thought ImageJ did not support reading
LEI files
>without the Bio-Formats plugin. So I'm guessing Mike & Joel
have Bio-Formats
>installed, and ImageJ is calling it when they drag and drop?
>
>If so, then I'm guessing there is a bug in Bio-Formats with
LEI, in which
>case I would be glad to fix the problem, if someone can send
me a stack
>trace and/or sample data that demonstrates the problem.
>
>-Curtis
>
>On Fri, Jun 20, 2008 at 3:04 PM, Michael Weber
<
[hidden email]> wrote:
>
>> Mike,
>>
>> a very general answer, but: did you try the Bio-Formats plugin?
>>
>> Michael
>>
>>
>>
>> Michael Doube wrote:
>>
>>> Hi all
>>>
>>> I tried to open someone else's images taken on a Leica SP1
confocal
>>> microscope by dragging and dropping the .lei file (which
describes the
>>> imaging session) onto ImageJ, but I got an error that the
directory couldn't
>>> be found - it looked as though the plugin was duplicating
the directory name
>>> string then confusing itself by looking for
~/images/directory_1directory_1/
>>> instead of just ~/images/directory_1/
>>>
>>> I don't have access to the images right now so can't give
exact details of
>>> the error message. Can anyone else confirm this behaviour?
>>>
>>> This is ij 1.41e on 32-bit Ubuntu 8.04, using the
IJ-bundled JRE.
>>>
>>> Mike
>>>
>>
Joel B. Sheffield
Professor, Department of Biology
Temple University
Philadelphia, PA 19122
[hidden email]
http://astro.temple.edu/~jbs