Login  Register

Re: How do I disable the automatic generation of Hyperstacks?

Posted by ctrueden on Jun 20, 2008; 2:12pm
URL: http://imagej.273.s1.nabble.com/How-do-I-disable-the-automatic-generation-of-Hyperstacks-tp3695817p3695821.html

Hi aRnim,

If you use the Bio-Formats Importer plugin (
http://www.loci.wisc.edu/ome/formats.html), you can choose whether to
display the result as a hyperstack, a standard (2D) ImageJ window, an
Image5D window (if you have the Image5D plugin installed), a View5D window
(if you have the View5D plugin installed), or a Data Browser window (a 5D
visualization plugin bundled with the Bio-Formats plugins).

-Curtis

On Thu, Jun 19, 2008 at 7:20 PM, aRnim <[hidden email]> wrote:

> Hi,
> in the newer versions of ImageJ my stacks (lsm) open up as Hyperstacks.
> This
> is pretty disturbing, because
> - I'd rather work on the original channels - as before,
> - I can not see both channels at the same time anymore,
> - the color scheme (red-green) is not suited for presentation because it is
> not readable for colorblind (check out this page:
> http://jfly.iam.u-tokyo.ac.jp/color/)
> - a whole bunch of macros I wrote for image analysis is not working
> anymore.
>
> Could this please changed back?
> Or can we get a toggle somewhere to switch off this function?
>
> I think most of us ImageJ-users love ImageJ for the direct access to their
> data, now with the hyperstacks there was an an unwanted layer introduced
> into  the data access. I think this was a step in the wrong direction. Am I
> alone with this perception?
> Best,
> aRnim
>
> --
> View this message in context:
> http://www.nabble.com/How-do-I-disable-the-automatic-generation-of-Hyperstacks--tp18015027p18015027.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>