Re: Analyze particles without GUI

Posted by Thomas Boudier on Apr 18, 2008; 12:40pm
URL: http://imagej.273.s1.nabble.com/Analyze-particles-without-GUI-tp3696537p3696540.html

Hi,

Maybe you need to add space in our analyse particle command like :

run("Analyze Particles...",
 > "Size="+dimensione+" Cicularity="+curvatura+" Show="+forma+" Include
Holes");

It is best to make a template from plugins/record, it's looks like this
with my version (1.40d) :
run("Analyze Particles...", "size=0-Infinity circularity=0.00-1.00
show=Ellipses display exclude include add slice");

Thomas

federica viti a écrit :

> On Fri, Apr 18, 2008 at 12:07 PM, Gabriel Landini <[hidden email]>
> wrote:
>
>> On Friday 18 April 2008 09:52:27 federica viti wrote:
>>> Hi!
>>> I'm new to ImageJ and I'm working in batch mode, using macros, without
>> GUI.
>>> I run Analyze Particles on an active image, but then I'm not able to
>> save
>>> the produced output (the elaborated image and, particularly, the txt
>>> results file reporting the measurements): if I run the 'save' command it
>>> saves the input image, not the output one.
>>> I looked around in Internet but I couldn't find the solution.
>>> Can anyone help me, please?
>>> Thank you very much,
>>> Federica
>>
>> I guess that you are not issuing "selectImage" and "selectWindow" commands
>> before applying the "save".
>>
>> Cheers,
>>
>> G.
>>
>
>
> Hi!
> here's a part of my code.
> "Results" is the name (string) of the xtx window in output from the Analyze
> Particles macro.
>
> path = "/mydir/try.txt";
> dimensione="300-Infinity";
> curvatura="0.00-1.00";
> forma="Ellipses";
> run("Analyze Particles...",
> "Size="+dimensione+"Cicularity="+curvatura+"Show="+forma+"Include Holes");
> //I also tried with adding +"Display Results"+ option, but still doesn't
> work
> selectWindow("Results");
> save(path);
>
> and if I execute the shell command:
> ./jre/bin/java -jar ij.jar -batch macros/FedeTries_BatchMode.txt
> the output is:
> No window with the title "Results" found.
> This command requires a TextWindow such as
> the "Log" window or an "Info for..." window.
>
> I can't undestrastand what's wrong..
>
> Cheers,
> Federica
>
>

--
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     Thomas Boudier, MCU Université Paris 6,
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