Re: Problems reading LSM files
Posted by
Michael Weber-4 on
Apr 11, 2008; 2:21pm
URL: http://imagej.273.s1.nabble.com/Problems-reading-LSM-files-tp3696572p3696577.html
Ronald,
sounds strange, current 12bit LSM stacks work fine on my side with
standard ImageJ 1.40 LSM support. Did you try the LOCI BioFormats Reader
for import? This might help to figure out where the problem comes from.
Michael
Ronald Steffen wrote:
> Hi all,
>
>
>
> I just installed ImageJ (Ver. 1.39u) and the LSM Toolbox (Ver. 4.0c). When I
> try to read my Zeiss 510 Meta 12 bit lsm-files the read images or stacks are
> corrupted.
>
> There's only bit-noise, the lower part of the images is black and stacks
> have about half the number of frames. This is the same whether I use ImageJ
> or LSM Toolbox to read the files. The preview in the Open LSM dialog shows a
> 2x2 tiled version of the original uncorrupted image. There seems to be an
> issue with recognizing the file header.
>
> Does anyone have the same problem and a solution? I seem to have installed
> the latest software versions but the microscope was purchased rather
> recently (within the last 6 month). Did they modify there files formats
> again?
>
> I'm grateful for any suggestions.
>
>
>
> Cheers,
>
> Ronald