Re: Visualize orthogonal views / 3D reconstruction

Posted by Joel Sheffield on Apr 02, 2008; 2:26pm
URL: http://imagej.273.s1.nabble.com/Visualize-orthogonal-views-3D-reconstruction-tp3696642p3696658.html

Have you tried the ImageJ Stacks>reslice command?  You can set any
number of slices, and create  a "z" stack that is orthogonal to your
slice.  The trick is to enter the distance between adjacent slices.  

Joel



Date sent:       Wed, 2 Apr 2008 14:48:14 +0200
Send reply to:   ImageJ Interest Group <[hidden email]>
From:           Christophe Leterrier
<[hidden email]>
Subject:         Visualize orthogonal views / 3D reconstruction
To:             [hidden email]

> Dear all,
>
> I have Zstacks (.tif format) that I would like to visualize as orthogonal
> views and/or 3D reconstructions. I tried the ImageJ OrthView plugin but it
> is very slow and buggy. Volume Viewer plugin is also quite slow. Do you
> recommand any free software, preferably OSX or multi-platform, that can
> handle thse task with a reasonnable performance  (I'm on an iMac Core2Duo
> 2.4 GHz, 2Go RAM). I tried BioImageXD but it is very unstable. I wanted to
> try Osirix but I don't know if it handles .tif files and also it is OSX 10.5
> only (I'm under 10.4).
>
> Any other propositions ?
>
> Christophe Leterrier

--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
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