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Re: Visualize orthogonal views / 3D reconstruction

Posted by NeLaS on Apr 02, 2008; 1:31pm
URL: http://imagej.273.s1.nabble.com/Visualize-orthogonal-views-3D-reconstruction-tp3696642p3696660.html

Christophe,

You could try Voxx2:

http://www.nephrology.iupui.edu/imaging/voxx/

I used it a few times to render TIF stacks and it worked well. It has a
function to cut planes so that might do the job for you.

bruno

On Wed, Apr 2, 2008 at 10:13 AM, Joseph Poczatek <
[hidden email]> wrote:

> One thing I've been playing around with is Visit from LLNL.
> https://wci.llnl.gov/codes/visit/
>
> It can open a stack of tifs from a image list file (ie a text file with
> the path to each image), do an intensity volume plot, orthogonal
> views/thresholds etc.
>
> But, it's not simple/small software (it was written to render/visualize
> terabyte sized datasets), and the UI isn't exactly intuitive.
>
> I've run it on a Linux/Core2Duo and a OSX/G4 machine, so it's pretty
> platform agnostic.
>
> Hope that helped,
> Collin
>
>
>
>
> Quoting Christophe Leterrier <[hidden email]>:
>
>  Dear all,
> >
> > I have Zstacks (.tif format) that I would like to visualize as
> > orthogonal
> > views and/or 3D reconstructions. I tried the ImageJ OrthView plugin but
> > it
> > is very slow and buggy. Volume Viewer plugin is also quite slow. Do you
> > recommand any free software, preferably OSX or multi-platform, that can
> > handle thse task with a reasonnable performance  (I'm on an iMac
> > Core2Duo
> > 2.4 GHz, 2Go RAM). I tried BioImageXD but it is very unstable. I wanted
> > to
> > try Osirix but I don't know if it handles .tif files and also it is OSX
> > 10.5
> > only (I'm under 10.4).
> >
> > Any other propositions ?
> >
> > Christophe Leterrier
> >
> >
>
>
>
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--
Bruno C. Vellutini
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