Posted by
Raymond Coory on
Mar 14, 2007; 6:27am
URL: http://imagej.273.s1.nabble.com/StackReg-Help-tp3696845p3696847.html
Hi Mikinka,
I use stackreg and it works amazingly well. You need to install both
plugins, stackreg and turboreg, but you only use stackreg for image
alignment.
When you have your stack open, choose the picture you want to use as
your reference for aligning, then open the stackreg plugin. The option
"scaled rotation" will correct for position, size, and rotation. When
the alignment is finished, save the stack or the individual images.
(Don't scroll through the stack while the plugin is working!)
If you get an "out of memory" message, either your images are too big or
you haven't allocated enough memory in ImageJ
Raymond
-----Original Message-----
From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
Mikinka
Sent: Wednesday, 14 March 2007 5:51 p.m.
To:
[hidden email]
Subject: StackReg Help!
Hello,
I'd like to use StackReg plugin to align a stack of images.
I downloaded TurboReg plugin as written in the website of StackReg, and
followed the user manual. Following sentences are quotation from the
website, which I don't know how to do it.
---------------
The present plugin (StackReg) is used as a front-end to another plugin
named TurboReg. Several mechanisms are at work to exchange data between
these plugins. One of them involves temporary files which are written
into the temporary directory that ImageJ defines. The location of this
directory can be examined by issuing the macro command
'print(getDirectory("temp"));'.
The names of the written files are
* StackRegSource
* StackRegSourceR
* StackRegSourceG
* StackRegSourceB
* StackRegTarget
Warning: existing files of the same name in the temporary directory may
be silently overwritten.
--------------
Any help would be greatly appreciated!
Mikinka
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