Re: 3D segmentation in ImageJ

Posted by Thomas Boudier on Mar 11, 2008; 3:33pm
URL: http://imagej.273.s1.nabble.com/3D-segmentation-in-ImageJ-tp3696938p3696939.html

Hi,

For 3D segmentation I can advise you the plugin objectCounter :

http://rsb.info.nih.gov/ij/plugins/track/objects.html

I also have some plugins to process 3D binary images :
http://imagejdocu.tudor.lu/Members/tboudier/plonearticle.2007-01-08.6704298355/

Thomas


Kaustav Nandy a écrit :

> Hello List Users,
>
> I am new to ImageJ and would like to get some information about the
> software. I am planning to do some 3D segmentation using ImageJ. I
> looked into the plugins page, but couldn't find anything that would help
> me in doing the job. I have z-stacks of mouse embryos and would like to
> do the segmentation of individual nuclei. It would be very helpful for
> me if someone can provide me some information about any tools that
> available in ImageJ to do the segmentation in 3D.
>
> Thanks in advance.
>

--
/*****************************************************/
     Thomas Boudier, MCU Université Paris 6,
     UMR 7101 / IFR 83. Bat A 328, Jussieu.
     Tel : [phone]  Fax : [phone]
/****************************************************/