Posted by
Joel Sheffield on
Mar 11, 2008; 4:16pm
URL: http://imagej.273.s1.nabble.com/3D-segmentation-in-ImageJ-tp3696938p3696940.html
You might also be able to use Michael Abramoff's VolumeJ plugin. It
includes threshold settings for volume rendering.
Joel
Date sent: Tue, 11 Mar 2008 16:33:56 +0100
Send reply to: ImageJ Interest Group <
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From: Thomas Boudier <
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Organization: UPMC
Subject: Re: 3D segmentation in ImageJ
To:
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> Hi,
>
> For 3D segmentation I can advise you the plugin objectCounter :
>
>
http://rsb.info.nih.gov/ij/plugins/track/objects.html>
> I also have some plugins to process 3D binary images :
>
http://imagejdocu.tudor.lu/Members/tboudier/plonearticle.2007-01-08.6704298355/>
> Thomas
>
>
> Kaustav Nandy a écrit :
> > Hello List Users,
> >
> > I am new to ImageJ and would like to get some information about the
> > software. I am planning to do some 3D segmentation using ImageJ. I
> > looked into the plugins page, but couldn't find anything that would help
> > me in doing the job. I have z-stacks of mouse embryos and would like to
> > do the segmentation of individual nuclei. It would be very helpful for
> > me if someone can provide me some information about any tools that
> > available in ImageJ to do the segmentation in 3D.
> >
> > Thanks in advance.
> >
>
> --
> /*****************************************************/
> Thomas Boudier, MCU Université Paris 6,
> UMR 7101 / IFR 83. Bat A 328, Jussieu.
> Tel : 01 44 27 35 78 Fax : 01 44 27 25 08
> /****************************************************/
--
Joel B. Sheffield, Ph.D.
Biology Department, Temple University
1900 North 12th Street
Philadelphia, PA 19122
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(215) 204 8839, fax (215) 204 0486
http://astro.temple.edu/~jbs