Re: Measure multi ROI in a stack

Posted by Robert Dougherty on Jan 24, 2008; 12:00am
URL: http://imagej.273.s1.nabble.com/Measure-multi-ROI-in-a-stack-tp3697454p3697455.html

Kathy,
One approach is to use Analyze/Tools/ROI Manager....  See .More»/Multi Measure at the bottom of the ROI Manager panel.  There is also Multi Measure plugin on my site (optinav.com) that has slightly different capabilities.  If the cells are arranged in a regular pattern (do cells do that?), you might be able to use microarry profile, also on my site.
Bob
Robert P. Dougherty, Ph.D.
President, OptiNav, Inc.
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http://www.optinav.com

-----Original Message-----
From: "Kathryn Spencer" <[hidden email]>
Date:         Thu, 24 Jan 2008 13:17:04
To:[hidden email]
Subject: Measure multi ROI in a stack

Hello all;
        I am very new to ImageJ, and this is a very simple issue. So
simple, that I can't figure it out...
        I have a stack of images, showing cells that increase in
brightness over time. The cells do not move. I want to put one region
over each cell (about 100), then plot each cell's fluorescence intensity
over the stack. I can do this for one cell, but not for multiple cells.
        Is there a pre-made plugin for this? One was not immediately
obvious to me.
        Thank you for your patience.
        Kathy



Kathryn Spencer, Ph.D.
The Scripps Research Institute
ICND 210
10550 N. Torrey Pines Road
La Jolla, CA  92037
[phone]
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