Posted by
Ryan Deaton on
Jan 04, 2008; 8:28pm
URL: http://imagej.273.s1.nabble.com/ImageJ-driving-AVT-Guppy-CCD-cam-tp3697467p3697477.html
We also have an Aperio Scanscope and would like to do something similar
within imageJ.
We use Image Pro Plus and the Aperio IPPMacro plugin on occasion. This
works well for some applications. We are just in the beginning stages of
working with this. This method can make use of layers drawn within
ImageScope. You can have IPP process these layers.
You can extract regions of interest inside of the ImageScope application (to
jpg or tiff) and then analyze using ImageJ, but there is no way to directly
use imageJ on an svs file that I am aware of.
Aperio has a SDK that you can use with MS visual studio (C++) to build
custom algorithms to run inside of ImageScope. I have no experience with
this yet. Perhaps with the SDK you could build something that could use
ImageJ...
Also you can use Matlab to analyze images. I have some simple example .m
files from Aperio that show how to read in sequential image pieces from an
svs file and process them. Unfortunately, this procedure cannot utilize the
markup layers. It is basically a sliding window that moves across the
image.
What is your specific application?
Ryan Deaton
Pathology Information Systems Specialist
University of Illinois at Chicago
312-355-4338
-----Original Message-----
From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of Yan
Gao
Sent: Friday, January 04, 2008 1:56 PM
To:
[hidden email]
Subject: I would like doing image analysis of svs file by using imageJ
Dear ImageJ:
I have a naive question for imageJ group. In our lab, we have Aperio
scanscope. The image file is svs file. The image analysis tools of
Aperio are limited. I would like do image analysis of these svs file by
using imageJ. Can anyone tell me if I am able to open svs file in imageJ
Best Regards,
Yan
=====================================
Yan Gao, Doctoral of Science, HTL (ASCP)
Novartis Institutes for BioMedical Research
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