Re: ZVI slices

Posted by Thomas Lenoir on Dec 19, 2007; 5:37pm
URL: http://imagej.273.s1.nabble.com/ZVI-slices-tp3697728p3697730.html

Thanks all for your answers, using loci.plugins.Util.openProcessor  
gives me what I want (6 16bit slices and not 12 8bit slices). I was  
using loci.plugin.browser.ImagePlusWrapper before.

Thomas

Le 17 déc. 07 à 17:38, Curtis Rueden a écrit :

> Hi Thomas,
>
> Are you still using Bio-Formats to load the files? I'm surprised that
> calling the API is giving you a different bit depth in the image.
> Perhaps it is due to the way you are constructing your ImagePlus
> object.
>
> I recommend using loci.plugins.Util.openProcessor to extract
> ImageProcessor objects using an IFormatReader. Then you can use the
> ImageJ API on the ImageProcessors however you like as usual.
>
> If all else fails, to analyze differences in behavior, you can step
> through the source code of loci.plugins.Importer, which does most of
> the setup for getting images into ImageJ via Bio-Formats.
>
> If you need additional assistance, I would need to see your source  
> code.
>
> -Curtis
>
> On Dec 16, 2007 9:37 AM, Thomas Lenoir <thomaslenoir@club-
> internet.fr> wrote:
>> Hello everyone,
>>
>> I have written code for opening zvi files, but I get 12 slices of  
>> 8bit
>> each in place of 6 slices of 16bit, does anybody know how to merge
>> them to form 16bit images?
>> In ImageJ app it works as expected, when I open the zvi file it gives
>> me 6 windows.
>>
>> Thanks,
>> Thomas
>>
>
>