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Re: turboreg stack transformation

Posted by seb-7 on Nov 27, 2007; 1:23pm
URL: http://imagej.273.s1.nabble.com/turboreg-stack-transformation-tp3697915p3697916.html

Tony Lien wrote:

[snip]

> To implement #2, I call turboReg in the "transform" mode and load the source
> and target landmark coordinates from the registration performed in #1.  This
> does not work on a stack however, so I am doing it frame by frame.
> Unfortunately the whole process is quite slow and I suspect it might be due
> to the constant redrawing of windows and all the "duplicate" calls.  Is
> there a way I can improve the speed?

Hello Tony,

I think you're right.

Have you tried the "setBatchMode" function?

http://rsb.info.nih.gov/ij/developer/macro/functions.html#setBatchMode

before your big loop:

setBatchMode(true);

for(i=1; i <=numSlices; i++) { //for each slice
....//do something
}
....
setBatchMode(false);
updateDisplay();

this might speed up your macro.

sebastien