two-channel stack of images: x/y registration plane by plane?

Posted by Guenter Giese on Nov 20, 2007; 4:26pm
URL: http://imagej.273.s1.nabble.com/two-channel-stack-of-images-x-y-registration-plane-by-plane-tp3697967.html

Dear list members,

is there an ImageJ command or plugin to perform x/y registration of
two-channel stacks of images plane by plane (shift at least, maybe
rotation)?
 
I would like to correct for minor (mainly x/y) shifts in two-channel
recordings taken sequentially. There are enough co-localized structures who
should allow for automatic alignnment on a plane by plane basis.

The procedure should not care about neighboring planes or "master" or
"reference" planes.

The plugins I already looked at (TurboReg, StackReg) use masks generated
from adjacent or dedicated planes and mainly focus on registration in z
direction.


Thanks for suggestions,


Guenter

------------------------------------------
Dr. Guenter Giese
Light Microscopy Facility Manager
Dept. of Biomedical Optics
MPI fuer Medizinische Forschung Jahnstr. 29
D-69120 Heidelberg, Germany
Phone [phone] (Fax: -325)
e-mail: guenter.giese(-at-)mpimf-heidelberg.mpg.de