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Re: save image as CSV?

Posted by Stanislav Vitha on Nov 19, 2007; 6:52pm
URL: http://imagej.273.s1.nabble.com/save-image-as-CSV-tp3697977p3697979.html

Dear Christophe,
Thank you so much!

Stan

At 12:20 PM 11/19/2007, you wrote:

>Stanislav Vitha a écrit :
> > Hi,
> > is there a way to save the image as comma separated value (ideally with
> > the option of including/not including a header in the first line)?
> > The images are grayscale, 8, 16 or 32 bit.
> > Something like this:  The coordinates (X,Y) and pixel values (Ch1) should
> > be in the calibrated units.
> >
> > X,Y,Ch1
> > 0.000,0.000,125000.000
> > 1.000,0.000,130000.000
> > 2.000,0.000,140000.000
> > 3.000,0.000,125000.000
> > 4.000,0.000,135000.000
> > 5.000,0.000,130000.000
> > 6.000,0.000,120000.000
> > 7.000,0.000,140000.000
> > 8.000,0.000,140000.000
> > 9.000,0.000,140000.000
> > ...
> > ...
> > 152.000,377.000,95000.000
> >
> > Thanks!
> >
> > Stan Vitha
> >
> >
> > Dr. Stanislav Vitha      [hidden email]
> > Microscopy and Imaging Center
> > Texas A&M University
> > BSBW 119
> > College Station, TX 77843-2257
> >
> >
> >
>Hello,
>
>I haven't seen any response for this mail.
>A simple macro (brutal force) :
>---------snip-------------------
>row=0;
>w=getWidth();
>h=getHeight();
>for(x=0;x<=w;x++){
>     for(y=0;y<=h;y++){
>         v=getPixel(x,y);
>         setResult("X",row,x);
>         setResult("Y",row,y);
>         setResult("value",row,v);
>         row++;
>     }
>}
>updateResults();
>
>---------snap-------------------
>
>Copy-paste in a new macro then run. Save the Results with .csv extension ...
>
>Cheers,
>
>--
>Christophe CHAMOT
>---------------------------------------------------------------------
>Plate-Forme de Recherche UMR7592
>"Imageries des Processus Dynamiques
>en Biologie  Cellulaire et Biologie du Développement "
>Institut Jacques Monod, CNRS,  Universités Paris 6 et 7
>2, place Jussieu - Tour 43
>75251 Paris cedex  05
>Tel: 01 44 27 47 56
>fax: 01 44 27 98 57
>http://www.ijm.fr/
>---------------------------------------------------------------------

Dr. Stanislav Vitha      [hidden email]
Microscopy and Imaging Center
Texas A&M University
BSBW 119
College Station, TX 77843-2257

tel: 979-845-1129 (main desk)
tel: 979-845-1607 (direct link)
fax: 979-847-8933