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Re: Opening Compressed images

Posted by minred on Nov 12, 2007; 5:41pm
URL: http://imagej.273.s1.nabble.com/Opening-Compressed-images-tp3698050p3698054.html

Hi

I have downloaded the plugin to ImageJ (1.38) and I can see LOCI sub-menu in Plugins.

When i tried to open sample DICOM image  http://www.barre.nom.fr/medical/samples/files/XA-MONO2-8-12x-catheter.gz

I get the following exception.

loci.formats.FormatException: Unknown file format: /tmp/XA-MONO2-8-12x-catheter
        at loci.formats.ImageReader.getReader(ImageReader.java:138)
        at loci.plugins.Importer.run(Importer.java:98)
        at loci.plugins.LociImporter.run(LociImporter.java:74)
        at ij.IJ.runUserPlugIn(IJ.java:158)
        at ij.IJ.runPlugIn(IJ.java:124)
        at ij.Executer.runCommand(Executer.java:95)
        at ij.Executer.run(Executer.java:49)
        at java.lang.Thread.run(Unknown Source)

I tried with another sample image  http://www.barre.nom.fr/medical/samples/files/CT-MONO2-16-chest.gz
and the exception is same.

loci.formats.FormatException: Unknown file format: /tmp/CT-MONO2-16-chest
        at loci.formats.ImageReader.getReader(ImageReader.java:138)
        at loci.plugins.Importer.run(Importer.java:98)
        at loci.plugins.LociImporter.run(LociImporter.java:74)
        at ij.IJ.runUserPlugIn(IJ.java:158)
        at ij.IJ.runPlugIn(IJ.java:124)
        at ij.Executer.runCommand(Executer.java:95)
        at ij.Executer.run(Executer.java:49)
        at java.lang.Thread.run(Unknown Source)

Any help will be appreciated.


Curtis Rueden wrote

You can download from:
http://www.loci.wisc.edu/ome/formats.html

Please let me know if you have any trouble with it.

-Curtis