colocalization batch processing

Posted by laurent barbe on May 29, 2006; 4:05pm
URL: http://imagej.273.s1.nabble.com/colocalization-batch-processing-tp3698306.html

Hi all,

 

I am running colocalization test on stacks (12bit, 4 channels) using the
coloc. threshold plugin.

It works fine but now I need to run it on a large number of stacks; so I
basically want to batch process this operation, where I compare my channel
of interest to 3 others, leading to 3 sets of results (which I'd like to
automatically save) using the aforementioned plugin

I found some plugins dealing with stacks, but not yet able to compare one
channel to 2,3 others and to run a specific operation (in my case
colocalization threshold with specific options)

Is anybody faced this kind of situation before?

 

Thank you,

 

Laurent

 

______________________________________________

Laurent Barbe, Research Fellow

Royal University of Technology (KTH)

School of Nanobiotechnology - Dpt of Biotechnology

Roslagstullsbacken 21, 10601 STOCKHOLM

SWEDEN

Tel: [phone]

Fax: [phone]