Re: Import->Virtual Stack ...

Posted by karo03 on Sep 10, 2007; 1:20pm
URL: http://imagej.273.s1.nabble.com/Import-Virtual-Stack-tp3698398p3698402.html

Thank, Michael, you for that hint.
I never tried image related functions on stacks. That eases many things.

Karsten

Am 10.09.2007 um 14:03 schrieb Michael Weber:

> Hi Karsten,
>
> 1) select the plane of interest in the stack
> 2) image > duplicate
>
> You can also reduce the stack by deleting slices before and after  
> the current image. Or do this in a certain range and then convert  
> the stack into images.
>
> cheers,
> Michael
>
>
> Karsten Rodenacker wrote:
>> Thank you, Wayne, for the information.
>> Is there any other possibility to extract from a stack one slice  
>> as image? I find only "Convert Stack to Images" for all images. In  
>> my case I have some thousand z (or better t) slices, which causes  
>> some problems.
>> Karsten
>> Am 09.09.2007 um 02:20 schrieb Rasband Wayne:
>>> The File>Import>Image Sequence command does not work with the  
>>> Analyze_Reader plugin. It does work with reader plugins that  
>>> extend the ImagePlus class, such as IPLab_Reader or  
>>> Biorad_Reader. In addition, the "Use Virtual Stack" option only  
>>> works with a series of individual images, not with stacks.
>>>
>>> -wayne
>>>
>>> On Sep 4, 2007, at 10:51 AM, Karsten Rodenacker wrote:
>>>
>>>> Interesting behavior of "Import -> Virtual Stack..."!
>>>> if I select an analyze file *.img or *.hdr the program tries  
>>>> seemingly to read in all img files in the folder up to memory  
>>>> exhaustion.
>>>>
>>>> I expected that only one slice of the stack is read in? Each of  
>>>> my img files contain one 3d stack. Possibly I have misunderstood  
>>>> the virtual stack?
>>>>
>>>> Thanks for any hint or help
>>>> Karsten