Re: Custom TEM acquisition software

Posted by Albert Cardona on
URL: http://imagej.273.s1.nabble.com/Custom-TEM-acquisition-software-tp3698512p3698513.html

Hi Toby,

Best software I know (and open source!) is Leginon, made by the
http://ami.scripps.edu people. It's made in python and interfaces a
variety of FEI microscopes, and Gatan and Tietz cameras.

I use it extensively. Then I process the images with ImageJ + TrakEM2,
the latter an ImageJ plugin of my own cooking available here:

    http://www.ini.uzh.ch/~acardona/trakem2.html

You can see some of the results of combined Leginon and TrakEM2 here:

    http://fly.mpi-cbg.de

Just choose the "Leginon" slice, which was generated with automatic tile
stitching, histogram correction and background removal options.

Albert

--
Albert Cardona
http://www.mcdb.ucla.edu/Research/Hartenstein/acardona