http://imagej.273.s1.nabble.com/Zeiss-LSM-Scan-Type-2-tp3698595p3698601.html
Thank you for the beta version of LSM Toolbox. At least for my
request, if I may. In addition to being able to dump the time stamps
> Hi Philip,
>
> Somehow I bugged the url. This should work:
>
http://www.image-archive.org/fileadmin/user_upload/files_/
> LSM_Toolbox_4.0c/L
> SM_Toolbox.jar
>
> Best regards,
>
> Patrick
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf
> Of Philip
> Ershler
> Sent: 08 August 2007 21:38
> To:
[hidden email]
> Subject: Re: Zeiss LSM Scan Type 2
>
> Hello Patrick,
> The link below is not found on your server. I did start at
> www.image- archive.org and found the LSM_Toolbox_4.00b_src.jar
> file. But Im
> afraid I don't know enough about Java to know how to compile the
> source. I
> certainly appreciate your efforts.
>
> Thanks, Phil
>
> On Aug 8, 2007, at 1:50 AM, Patrick Pirrotte wrote:
>
>> Hi,
>>
>> The version was not released yet. Meanwhile, I put a beta version of
>> the plugin here:
>>
>>
http://www.image-archive.org/typo3conf/ext/dam/mod_file/fileadmin/>> user_uploa
>> d/files_/LSM_Toolbox_4.0c/LSM_Toolbox.jar
>>
>> It supports linescans and has a few bugfixes/improvements.
>>
>> Best regards,
>>
>> Patrick
>>
>> -----Original Message-----
>> From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
>> Philip Ershler
>> Sent: 07 August 2007 06:47
>> To:
[hidden email]
>> Subject: Re: Zeiss LSM Scan Type 2
>>
>> Gentlemen,
>> Was this new version of the LSM Toolbox ever released? I can't seem
>> to fine any reference to it.
>>
>> Thank You,
>>
>> Phil
>>
>> On Apr 25, 2007, at 3:09 PM, jerome mutterer wrote:
>>
>>> I'm sorry I haven't answered earlier.
>>> We have accumulated a number of bugfixes and a new version of LSM
>>> Toolbox is going to be released in the next 2 or three week. This
>>> version will support line scans as well, thanks to the cited report.
>>> Sincerely,
>>> Patrick and Jerome
>>>
>>>
>>> On 4/25/07, Philip Ershler <
[hidden email]> wrote:
>>>>
>>>> I guess this is really a question for Wayne.
>>>>
>>>> I am trying to deal with linescan images that come from a Zeiss LSM
>>>> 510 confocal. Initially, when I tried to open a linescan file with
>>>> either LSM_Reader or the LSM_Toolbox, I got a message
>>>>
>>>> Unsupported LSM scantype: 2
>>>>
>>>> So I got the source for LSM_Reader Plug In and added the
>>>> following code to the switch for case 2: in LSM_Reader.java.
>>>>
>>>> ImagePlus[] imps = null;
>>>> switch (cz.ScanType) {
>>>> case 0:
>>>> imps = readStack(stream, lsmFi, cz, thumb);
>>>> return imps;
>>>> case 1:
>>>> imps = readStack(stream, lsmFi, cz, thumb);
>>>> return imps;
>>>> case 2:
>>>> imps = readStack(stream, lsmFi, cz, thumb);
>>>> return imps;
>>>> case 3:
>>>> imps = readStack(stream, lsmFi, cz, thumb);
>>>> return imps;
>>>> case 4:
>>>> imps = readStack(stream, lsmFi, cz, thumb);
>>>> return imps;
>>>> case 5:
>>>> imps = readStack(stream, lsmFi, cz, thumb);
>>>> return imps;
>>>> case 6:
>>>> imps = readStack(stream, lsmFi, cz, thumb);
>>>> return imps;
>>>> default:
>>>> if (verbose)
>>>> IJ.error("Unsupported LSM
>>>> svvcantype: " +
>>>> cz.ScanType);
>>>> break;
>>>> }
>>>> return imps;
>>>>
>>>> Now the LSM_Reader Plug In seems to open the LSM linescan
>>>> files without problem. It would be very useful if linescan files
>>>> could be opened from the LSM_Toolbox. I understand from the web
>>>> site
>>>> run by
[hidden email] and
>>>>
[hidden email]
>>>> that the LSM_Toolbox uses a version of LSM_Reader that has been
>>>> integrated in ImageJ. Is there any chance that the above patch
>>>> could
>>>> be included in the integrated LSM_Reader? I have sent e-mail to
>>>>
[hidden email] and
[hidden email]
>>>> (who have very kindly written the Zeiss LSM support). As of yet, I
>>>> have not heard back.
>>>>
>>>> Thank You,
>>>>
>>>> Phil
>>>>
>>>>
>>>>
>>>>