Re: Deconvolve 3D plugin problem

Posted by Robert Dougherty on Jul 04, 2007; 3:07pm
URL: http://imagej.273.s1.nabble.com/Workflow-for-importing-DV-video-tp3698931p3698941.html

Przemko,

Bit depths don't help because the plugin converts the input to 32-bit
floating point for its internal calculations.  At the moment, the only
option that I know of is to process smaller image stacks.

Bob

Robert P. Dougherty, Ph.D.
President, OptiNav, Inc.
Phone [phone]
Fax [phone]
www.optinav.com
 

> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Przemko
> Sent: Wednesday, July 04, 2007 4:24 AM
> To: [hidden email]
> Subject: Deconvolve 3D plugin problem
>
> Hi!
> I have the following machine: Dell, dual core Pentium, 4Gb RAM. My
> ImageJ version is the lates one (w) and my memory is set to the max
> allowed (1.7G). I am trying to run Deconvolve3D plugin on a 16bit TIFF
> file and I have the following problem. First I make a PSF (I usually get
> R values of 3. something) and then I use that as the PSF input in th
> eplugin. Then the plugin crashes with the following message:
>
>  >>>>>>>>>>>>>>>>>>>>>>>>>>>
> <Out of memory>
> <All available memory (1587MB) has been>
> <used. Instructions for making more>
> <available can be found in the "Memory" >
> <sections of the installation notes at>
> <http://rsb.info.nih.gov/ij/docs/install/>
>  >>>>>>>>>>>>>>>>>>>>>>>>>>>
>
> I tried it with other bit depths as well but the problem persisted.
> Could anyone help me out?
> Thank you!
> Przemko
>
>
>
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>          Przemko Tylzanowski Ph.D.
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