Posted by
Francesco Lassandro on
May 11, 2007; 7:47pm
URL: http://imagej.273.s1.nabble.com/3d-reconstruction-tp3699499p3699502.html
Hi Dianne,
we are working about volume meaurements on CT scans, in particular on
lymphomas, at the moment we have produced a plugin that allows area
measurement with a single click (a sort of magic wand) based on edge
detection. this ImageJ plugin (YAWI 2D) is available at
http://yawi3d.sourceforge.net/ciao
Francesco
----- Original Message -----
From: "Dianne Patterson" <
[hidden email]>
To: <
[hidden email]>
Sent: Thursday, May 10, 2007 1:11 AM
Subject: Re: 3d reconstruction
> Are these tools only meant for the microscopic level? I have MRIs of the
> hippocampus...I'd like to get volume measurements of the hippocampus. Any
> suggestions? (I have played with ITK_snap and intend to give it another
> try...it seemed a bit unstable on windows at the time (several months
ago)..
>
> Thankyou,
>
> Dianne
>
> On 5/9/07, Albert Cardona <
[hidden email]> wrote:
> >
> > Hi Janine,
> >
> > If by 'reconstruct' you mean to create 3D meshes, I am writing a program
> > to do
> > just that.
> >
> >
http://www.ini.uzh.ch/~acardona/trakem2.html> >
> > Besides exact meshes generated from painted areas or from outlines, one
> > can also
> > quickly sketch tubes and spheres (ideal for neurites at confocal
> > resolution).
> > Tubes are drawn as lines across multiple sections, and spheres as single
> > points
> > with a radius. See for example this image of a 3D scene generated with
> > TrakEM2:
> >
> >
http://www.ini.uzh.ch/~acardona/img/unfinished.jpg> >
> >
> > We are very close to release a proper 3D viewer for ImageJ itself.
Perhaps
> > one
> > or two more weeks.
> >
> >
> > Albert
> >
> > --------------------------------------------------------------------
> > This message was sent using Webmail@INI:
https://webmail.ini.ethz.ch> >
>
>
>
> --
> Dianne Patterson, Ph.D.
>
[hidden email]
> ERP Lab
> University of Arizona
> 621-3256 (Office)