Re: How to do frame averaging?

Posted by Knecht, David on Mar 04, 2007; 5:52pm
URL: http://imagej.273.s1.nabble.com/How-to-do-frame-averaging-tp3700186p3700191.html

Nico's Micro-manager plugin for ImageJ (http://micro-manager.org)  
will do frame averaging during acquisition if your camera is  
supported.  Dave

Dr. David Knecht
Department of Molecular and Cell Biology
Co-head Flow Cytometry and Confocal Microscopy Facility
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)


On Mar 4, 2007, at 12:12 PM, Tony Collins wrote:

> There's Nico Stuurman's Running Zprojector plugin:
> http://valelab.ucsf.edu/~nico/IJplugins/Running_ZProjector.html
> (You can think of it as a Running TProjector also - sometimes ImageJ
> assumes the third dimension is Z but it can equally be T, e.g. "Plot
> Z-axis profile" is the same as "Plot intensity vs time").
>
> Have a look at Christopher Philip Mauer's Kalman Filter plugin too.
> http://rsb.info.nih.gov/ij/plugins/kalman.html
>
> Regards,
> Tony
>
> Tony J. Collins, Ph.D.
> McMaster Biophotonics Facility
> Dept. Biochemistry and Biomedical Sciences HSC 4H21A
> McMaster University, Hamilton, ON, L8N 3Z5
> [phone] x28812(off.)/x26488(lab)
> [hidden email]     www.macbiophotonics.ca
>
>
>> -----Original Message-----
>> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
>> Mikinka
>> Sent: Sunday, March 04, 2007 7:45 AM
>> To: [hidden email]
>> Subject: How to do frame averaging?
>>
>> Hi all,
>>
>> I am doing live cell imaging and I would like to do frame averaging
> such
>> as
>> getting average of 30 image frames to improve signal to background
> noise
>> ratios. I'm new to ImageJ. Any help would be greatly appreciated.
>>
>> Thanks!
>> Mikinka
>>
>> --
>> View this message in context: http://www.nabble.com/How-to-do-frame-
>> averaging--tf3342300.html#a9295533
>> Sent from the ImageJ mailing list archive at Nabble.com.