Posted by
Jeff Hardin on
Jan 10, 2007; 5:46pm
URL: http://imagej.273.s1.nabble.com/Re-Renaming-files-1-99-tp3700601.html
Dear Grant,
I had to write a plugin for this for Perkin-Elmer confocal stack
files. There's no other way I could figure out how to do this. I
should release this on the ImageJ web site, but need to clean it up
and comment the code. It involves (a) knowing your naming structure;
and (b) adding "0"s to pad the file name. The problem is that where
these zeroes have to go depends on the naming structure, so there is
no universal renamer that can realistically work.
Hope that helps...
Cheers,
Jeff
----------------------------------------------
Jeff Hardin
Professor, Department of Zoology
Director, Biology Core Curriculum
University of Wisconsin
1117 W. Johnson St.
Madison, WI 53706
voice: (608) 262-9634
fax: (608) 262-7319
email:
[hidden email]
On Jan 4, 2007, at 11:00 PM, IMAGEJ automatic digest system wrote:
> Date: Thu, 4 Jan 2007 12:38:15 -0800
> From: "McAuley, Grant (LLU)" <
[hidden email]>
> Subject: Raw Image Stacks: Image Ordering/Reordering
>
> Sorry if this has been asked before (searched list archives - maybe
> not right combination of words?).
>
> I need to import stacks of raw images using File->Import->Raw and
> selecting 'Open All Files in Folder'. The images have filenames
> that contain letters and numbers: zz-1, zz-2, ... , zz-10,
> zz-11, ..., zz-48.
>
> When the stack gets created the order becomes: zz-1, zz-10,
> zz-11, ... , zz-2, zz-21, ... instead of what I want: zz-1,
> zz-2, ..., zz-10, zz-11, ...
>
> 1) Can I tell ImageJ to do a numeric instead of alpha sort on the
> filename numbers when the stack is created?
> 2) If not, is there a better way to resort the stack than the
> 'Stack Sorter' plugin (nice, but tedious for 48 images/stack)?