Posted by
Nick Mortimer on
Nov 30, 2006; 4:04am
URL: http://imagej.273.s1.nabble.com/Tiff-and-roi-files-tp3700924p3700925.html
Just a quick one,
Is there more than one ROI in the file? if so the ending might be .zip
Nick
-----Original Message-----
From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
Wayne Rasband
Sent: Thursday, 30 November 2006 12:08 AM
To:
[hidden email]
Subject: Re: Tiff and roi files
The path to the ROI file is probably incorrect. Try changing this line
in the macro
open(t+"\\Measured_D\\"+i+".roi");
to
roiPath = t+"\\Measured_D\\"+i+".roi";
print(roiPath);
open(roiPath);
to see what the path looks like. Then open the ROI using File>Open with
the recorder running and compare it to the path generated by the
recorder.
-wayne
On Nov 29, 2006, at 9:05 AM, Girault France wrote:
> Dear all,
>
>
> I'm having some troubles trying to open tif and roi files...
>
> Basically I have a folder with tiff images and another one with roi
> files (the roi file is supposed to be the selected particle of the
> corresponding image).
>
> I would like to open all the tiff images and their roi by running a
> macro, everytime I try, I get the message that the roi file is not
> found
> although the path is correct.
>
> Does anybody know another way to do so?
>
>
>
> Here is a part of the macro that I'm trying to use:
>
> (...)
>
> open(path);
>
> i=getTitle();
>
> if(endsWith(i, ".tif")==true)
> i=substring(i,0,lengthOf(i)-4);
>
> t=getDirectory("image");
>
> t=File.getParent(t);
>
> open(t+"\\Measured_D\\"+i+".roi");
>
> (...)
>
>
>
> I've also tried to open the complete folder of roi files, but even if
> the folder has more than 1 hundred files and all of them are selected
> to
> be opened, I cannot open them all together... only just few of them. I
> open these files by dragging and dropping the selection on ImageJ. It
> works well with tiff images where the complete folder can be open but
I
> don't know how to do so for roi files.
>
> Any ideas of how to do ?
>
>
>
> Many thanks,
>
>
>
> France
>