bioformats and olympus oib

Posted by Aryeh Weiss on
URL: http://imagej.273.s1.nabble.com/bioformats-and-olympus-oib-tp3701287.html

We are using the bioformats package to open Olympus OIB and OIF files.
Both of these can be opened by the bioformats package.

However, the OIB files open with the sequence of images scrambled in a way that
I cannot decifer. It is not just a matter of deinterleaving the stack.
The OIF files open ok -- they do not open properly into separate channels, but
if they are opened into one big stack, they can be deinterleaved to produce
stacks in the correct order for each channel.

The interesting thing is that the same problem occurs in Image Pro Plus, which
suggests that maybe something in the Olympus format changed. However, the
Olympus FV viewer software opens the files correctly

Any suggestions on this matter would be most welcome.
Thanks in advance.
--aryeh




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