Re: cell image analyzer

Posted by Volker Baecker on Sep 26, 2006; 9:33am
URL: http://imagej.273.s1.nabble.com/cell-image-analyzer-tp3701511p3701513.html

Hello,

you are right for the name. Our imaging facility is called Montpellier
RIO Imaging (short MRI).
And magnetic resonance imaging is IRM in French. We recognized the
possible confusion with
ourselves, but it is too late to change now.

Did you get it to run? You should unzip the zip-files in the ImageJ base
folder.
You can find some further information on
http://www.mri.cnrs.fr/mriwiki/index.php?pagename=Links%20and%20Readings

I'll try to fix the archive on the ImageJ documentation wiki and write
some installation instructions, as well.
I've you have any questions, don't hesitate to ask me.

Volker


Commandeur a écrit :

> Dear all,
>
> According to the Linux console 'file' commando, the file
> 'mri-toolbox-imagejconf-edition' (which is the file you get
> when you extract the 'mri-toolbox-imagejconf-edition.zip'
> download) is a POSIX tar archive.
>
> On Linux it can be untarred by doing:
> tar --extract --file=mri-toolbox-imagejconf-edition
>
> On windows I just had to add .tar to the filename and then
> it was noticed by WinRAR, and easy to extract using WinRAR
> additions to the right click menu. (by the way: TugZIP will
>  also do the job and is free)
>
> The file 'mri-toolbox-imagejconf-edition' contained another
> 4 zip files:
> MRI_LookupTableTool.zip
> MRI_SlideShowControl.zip
> MRI_Toolbox.zip
> MRI_VisualScripting.zip
>
> These zip files contained the eventual plugins and help files.
>
> That way I had to uncompress 3 times (easy when you know it).
>
> When I renamed the 'mri-toolbox-imagejconf-edition' to
> 'mri-toolbox-imagejconf-edition.zip' (after deleting the zip
> file I downloaded) I could also extract the file, but in
> that case I did not got 4 zip files, but a five directories,
>  and a html file 'About MRI Cell Image Analyzer.html'. The
> five directories are:
>
> _applications
> _help
> _lut
> _operations
> plugins
>
> It could well be that this is the way the authors intended
> the file to be uncompressed.
>
> Greetings,
> Edwin
>
>
>
>
>
>
>  
>> Dear all,
>>
>> The cell image analyzer described in Baeker and Travo seems
>> to be a very interesting interface, which I would very much
>> like to use for comparing intensity ratios.
>>
>> I downloaded the MRI-toolbox, but it did not have an
>> extension. I tried several things
>>
>> -naming it as a .jar file and trying to run it (not valid/or
>> no main method)
>> -naming it as a .jar file and placing it in the plugin
>> directory of ImageJ
>> -naming it as a .class file and trying to compile and run it
>>
>> None of the above worked. Is the package already avaible for
>> use? The name is 'mri-toolbox-imagejconf-edition', so it
>> ocurret to me that it might just be put online for demo
>> purposes.
>>
>> Any information about the 'cell image analyzer' would be
>> appreciated very much.
>>
>> Greetings,
>> Edwin Commandeur
>>
>> P.S. I don't want to be annoying, but I find the name
>> MRI-toolbox a bit confusing, given that MRI reminds me of
>> magnetic reasonance imaging.
>>
>>    
>
>  

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