http://imagej.273.s1.nabble.com/cell-image-analyzer-tp3701511p3701515.html
Thank you for the kind reply. Once I had the MRI-toolbox unzipped I
indeed got it to work. It did matter how I unzipped it for the files
that I managed to extract. Only by untarring I got the four zip files I
mentioned earlier. By unzipping (after changing the extension to .zip in
was looking for. I will try them out and will contact you if I still
A big thanks to all who worked on the cell image analyzer. ImageJ keeps
> Hello,
>
> you are right for the name. Our imaging facility is called Montpellier
> RIO Imaging (short MRI).
> And magnetic resonance imaging is IRM in French. We recognized the
> possible confusion with
> ourselves, but it is too late to change now.
>
> Did you get it to run? You should unzip the zip-files in the ImageJ base
> folder.
> You can find some further information on
>
http://www.mri.cnrs.fr/mriwiki/index.php?pagename=Links%20and%20Readings>
> I'll try to fix the archive on the ImageJ documentation wiki and write
> some installation instructions, as well.
> I've you have any questions, don't hesitate to ask me.
>
> Volker
>
>
> Commandeur a écrit :
>> Dear all,
>>
>> According to the Linux console 'file' commando, the file
>> 'mri-toolbox-imagejconf-edition' (which is the file you get
>> when you extract the 'mri-toolbox-imagejconf-edition.zip'
>> download) is a POSIX tar archive.
>>
>> On Linux it can be untarred by doing:
>> tar --extract --file=mri-toolbox-imagejconf-edition
>>
>> On windows I just had to add .tar to the filename and then
>> it was noticed by WinRAR, and easy to extract using WinRAR
>> additions to the right click menu. (by the way: TugZIP will
>> also do the job and is free)
>>
>> The file 'mri-toolbox-imagejconf-edition' contained another
>> 4 zip files:
>> MRI_LookupTableTool.zip
>> MRI_SlideShowControl.zip
>> MRI_Toolbox.zip
>> MRI_VisualScripting.zip
>>
>> These zip files contained the eventual plugins and help files.
>>
>> That way I had to uncompress 3 times (easy when you know it).
>>
>> When I renamed the 'mri-toolbox-imagejconf-edition' to
>> 'mri-toolbox-imagejconf-edition.zip' (after deleting the zip
>> file I downloaded) I could also extract the file, but in
>> that case I did not got 4 zip files, but a five directories,
>> and a html file 'About MRI Cell Image Analyzer.html'. The
>> five directories are:
>>
>> _applications
>> _help
>> _lut
>> _operations
>> plugins
>>
>> It could well be that this is the way the authors intended
>> the file to be uncompressed.
>>
>> Greetings,
>> Edwin
>>
>>
>>
>>
>>
>>
>>
>>> Dear all,
>>>
>>> The cell image analyzer described in Baeker and Travo seems
>>> to be a very interesting interface, which I would very much
>>> like to use for comparing intensity ratios.
>>>
>>> I downloaded the MRI-toolbox, but it did not have an
>>> extension. I tried several things
>>>
>>> -naming it as a .jar file and trying to run it (not valid/or
>>> no main method)
>>> -naming it as a .jar file and placing it in the plugin
>>> directory of ImageJ
>>> -naming it as a .class file and trying to compile and run it
>>>
>>> None of the above worked. Is the package already avaible for
>>> use? The name is 'mri-toolbox-imagejconf-edition', so it
>>> ocurret to me that it might just be put online for demo
>>> purposes.
>>> Any information about the 'cell image analyzer' would be
>>> appreciated very much.
>>> Greetings,
>>> Edwin Commandeur
>>>
>>> P.S. I don't want to be annoying, but I find the name
>>> MRI-toolbox a bit confusing, given that MRI reminds me of
>>> magnetic reasonance imaging.
>>>
>>>
>>
>>
>