Posted by
nitya thiyagarajan on
Mar 17, 2006; 4:52pm
URL: http://imagej.273.s1.nabble.com/drawing-in-ImageJ-tp3703324p3703332.html
I am trying to open a metamorph-generated timelapse image stack (nd file)
from Image-J, through the "nd stack builder" plugin. This experiment
has about 10 stage positions, two wavelengths, 3 z planes for each
wavelength and about 90 time points. I am able to build the time series
stack after doing the desired z projection. However, I am not able to do it
for just one desired position and/or wavelength (even if I specify the
desired position and wavelength from the pulldown menu). In other words,
the plug-in is always wanting all the sequential time point stacks for all
wavelengths and positions starting from position1, wavelength 1, timepoint 1
(it can do 1, 1-2, 1-3 etc, but not just for 2 or 3 only or the second
wavelength only). Does any one know if I can have this plugin to build only
the time series stack for the desired position and wavelength? (I have tried
changing the nd file code to make it read the experiment has having only one
position and wavelength, and it does show up as 1 position/1 wavelength when
I open it, but still is not able to build the stack). Any tips on this issue
will be greatly appreciated.
Thank you
Regards
Nitya Thiyagarajan
Graduate Research Assistant
UMKC-Dental School
On 3/17/06, Jeff Brandenburg <
[hidden email]> wrote:
>
> On Mar 16, 2006, at 12:16 PM, Joseph Vandergracht wrote:
> > Is it reasonable to believe that there will be ways of running
> > 'Classic' apps in the next year or so on
> > an intel Mac?
>
> Yes, it seems likely. There are Mac emulators that run on Linux, and
> there are lots of people who want to get them running on OS X for just
> this purpose. Performance may be better or worse than you're seeing
> with Virtual PC on the Mac; I wouldn't know what to expect.
>
> > Or might it be possible in the futuer to run the WIndows version of
> > NIH Image on an Intel Mac? (It
> > is painfully slow in emulatin on a current Mac).
>
> Well, it's now possible to run Windows XP itself natively on an Intel
> Mac:
>
>
http://www.engadget.com/2006/03/16/windows-xp-on-mac-solution-posted/>
> However, bringing up your Mac as a Windows box probably isn't what you
> wanted. (As I pointed out to someone else yesterday, you can also
> unplug it and use it as a nifty doorstop, but that, too, negates many
> of the advantages of the Mac.)
>
> It stands to reason that Virtual PC could perform much better on an
> Intel Mac, since you'd no longer be emulating x86 instructions on a
> PowerPC, but Microsoft hasn't had much to say about making an Intel
> version of VPC available.
>
> > Any thoughts or comments are welcome.
>
> Can you describe in any more detail what your drawing tasks are like,
> and what parts of NIH Image make those tasks easier? (I'll confess
> that I haven't really done any homework on this, because I've never run
> NIH Image.)
> --
> -jeffB (Jeff Brandenburg, Duke Center for In-Vivo Microscopy)
>