plugin nd stacks builder.......sorry I forgot to type in a subject for the previous query

Posted by nitya thiyagarajan on Mar 17, 2006; 4:56pm
URL: http://imagej.273.s1.nabble.com/plugin-nd-stacks-builder-sorry-I-forgot-to-type-in-a-subject-for-the-previous-query-tp3703378.html

I am trying to open a metamorph-generated timelapse image stack (nd file)
from Image-J, through the "nd stack builder" plugin. This experiment
has about 10 stage positions, two wavelengths, 3 z planes for each
wavelength and about 90 time points. I am able to build the time series
stack after doing the desired z projection. However, I am not able to do it
for just one desired position and/or wavelength (even if I specify the
desired position and wavelength from the pulldown menu).  In other words,
the plug-in is always wanting all the sequential time point stacks for all
wavelengths and positions starting from position1, wavelength 1, timepoint 1
(it can do 1, 1-2, 1-3 etc, but not just for 2 or 3 only or the second
wavelength only). Does any one know if I can have this plugin to build only
the time series stack for the desired position and wavelength? (I have tried
changing the nd file code to make it read the experiment has having only one
position and wavelength, and it does show up as 1 position/1 wavelength when
I open it, but still is not able to build the stack). Any tips on this issue
will be greatly appreciated.



Thank you
Nitya Thiyagarajan
Graduate Research Assistant
UMKC- Dental School