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Re: yoking cursor across different planes of section

Posted by Dianne Patterson on Feb 21, 2006; 4:40pm
URL: http://imagej.273.s1.nabble.com/yoking-cursor-across-different-planes-of-section-tp3703647p3703649.html

I will check out the tools R. Zimmerman pointed out!  Thanks for the
suggestion.
ImageJ is so flexible and open...I wish I could do more than write matlab
scripts and shell scripts : (

I'll just keep poking around in your wonderful program....it does SO much.

Dianne


On 2/21/06, Zimmerman, Robert Edward,M.S. <[hidden email]> wrote:

>
>
> I have longed for a 3D ROI tool for years, to no avail.
>
> Measure Stack plugin sort of does it, but I do not have a lot of
> experience with
> it.  You draw ROIs on slices in a stack and it interpolates between them
> to get
> a volume count.
>
> Also the Multi Measure plugin expands the ROI manager to aid in drawing a
> series
> of ROI in a stack to sort of get 3D ROIs.
>
> Neither shows the object in 3D, just working with a stack.
>
> Bob Z
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Dianne
> Patterson
> Sent: Saturday, February 18, 2006 3:06 PM
> To: [hidden email]
> Subject: yoking cursor across different planes of section
>
> Dear Group,
>
> Yesterday, I wrote to the group asking if anyone had drawn ROIs that
> updated
> in all three planes of section for a volume.
> Sadly, no one has come forward with a super plugin...so now I have a more
> modest question:
> Can I view 3 planes of section for a volume and  yoke the cursor?  Right
> now, I do not get accurate coordinates for any volume which I have
> rotated...that is, my original x,y, and z are not kept  and x simply
> corresponds to across the screen, y up and down and z through the
> slices...
>
> Thanks again,
>
> Dianne
>
> --
> Dianne Patterson, Ph.D.
> [hidden email]
> Cognition and NeuroImaging labs
> University of Arizona
> 626-4571 (Office)
>



--
Dianne Patterson, Ph.D.
[hidden email]
Cognition and NeuroImaging labs
University of Arizona
626-4571 (Office)