Posted by
Sanneke Brinkers on
URL: http://imagej.273.s1.nabble.com/no-subject-tp3703691.html
Dear All,
Lately, I have begun using macro's in ImageJ to process my images. When I
run my macro, I use the ICS-opener to open three channel .ics files. In a
for-loop, I select the windows of different channels by creating a string of
the filename + the iteration count and using the "selectWindow" function.
All goes well, but once in a while, the macro stops at a random image, for
example at image 25 ch 1, giving the error message: "image 25 ch 1.0 not
found". So it seems to put a ".0" behind the number in the for-loop and
tries to find an image-window with that name which doesn't exist.
This error is hard to reproduce and occurs only once in a while, so I
thought it might be a memory issue. I have configured ImageJ to use 1 GB of
memory and when the error occurs, this memory is not completely filled. I
have the following system configuration:
Dual Opteron 250 (AMD 2.4GHz) with 4 GB memory
Suse Linux 9.2 operating system
ImageJ 1.35p with java 1.5.0_04
I do not use the macro in batch mode
Anyone any idea?
Thank you in advance!
Best Regards,
Sanneke
===========================
Sanneke Brinkers
BioPhysical Engineering (BPE)
Faculty of Science and Technology
University of Twente
P.O. Box 217
7500 AE Enschede
The Netherlands
P: +31 53 489 3867
F: +31 53 489 1105
E: <mailto:
[hidden email]>
[hidden email]
I: <
http://bpe.tnw.utwente.nl>
http://bpe.tnw.utwente.nl