Stack registration, please help!

Posted by Elena Kardash on Jan 31, 2006; 4:09pm
URL: http://imagej.273.s1.nabble.com/New-Windows-launcher-ImageJ-exe-tp3703891p3703892.html

Dear LIST,

If some of you knows, please help: how to register two stacks?

I have two stacks of images, obtained from two different channels. There is a
shift
between the two. I am using the turboreg plugin, which works nicely to align
two images
but I was unsuccessful to align two stacks.

I tryed to register two stacks using a batch command, which did not work , as
it will
register one stack using as a target the first frame of the second stack. When
I tryed the
StackReg plugin it will only deal with one of the stacks at once.

The only way I can do it at the moment is to split the stacks to individual
images and then
to align them one by one, which is time consuming. To speed it up using the
macro did
not work either as the macro will stop after the  run("TurboReg "); command,
so I have to
activate the registration process manually.
 
 Any ideas ? It's a nightmare!!

Thanks a lot in advance
Elena