Posted by
Michael Doube-2 on
Jan 26, 2006; 1:59pm
URL: http://imagej.273.s1.nabble.com/Analyse-Particles-plot-output-tp3703943p3703945.html
Gary,
I've got the hang of it now. What is the best way to call shape
descriptor from a macro, sending it specific values for exclusion on
particle size and requested output types? I've tried the macro recorder
but it doesn't record details within your plugin! Also, I found that
shape descriptor worked a bit more predictably after compiling my own
binary from the source. (ImageJ 1.35g, Java 1.5.0_04, WinXP SP2)
Cheers
Mike
Gary Chinga wrote:
> The shape descriptor plugin yields a polar plot with the frequency of
> orientations.
>
http://home.online.no/~gary.c/IJ/Shape.htm>
> Gary.
>
>
> On Jan 25, 2006, at 6:48 PM, Michael Doube wrote:
>
>> Hi all
>>
>> I'd like to visualise the directions and lengths of vascular canals
>> / marrow space of trabecular bone (in 2D) as you might visualise
>> field lines. I thought that taking the major axes of the ellipses
>> calculated by Analyze Particles, and plotting them in a new window
>> could be a nice solution. Has anyone written anything like this, or
>> should I delve into Java myself?
>>
>> Cheers
>>
>> Mike
>>
>> --
>> Michael Doube BPhil BVSc MRCVS
>> MPhil / PhD Student
>> Dental Institute
>> Barts and The London School of Medicine and Dentistry
>> Queen Mary, University of London
>> New Rd
>> London E1 1BB
>> United Kingdom
>>
>> Phone +44 (0)20 7377 7000 ext 2681
>>
>>