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Re: ROI analysis of image stack

Posted by Robert Dougherty on Jan 13, 2006; 3:05am
URL: http://imagej.273.s1.nabble.com/ROI-analysis-of-image-stack-tp3704073p3704076.html

Yousef,

In Analyze/Set Measurements..., you can select "Slice Number" to get Multi
Measure or other things that use Measure to record the slice number.

Bob

Robert P. Dougherty, Ph.D.
President, OptiNav, Inc.
Phone (425) 467-1118
Fax (425) 467-1119
www.optinav.com
 

> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Mazaheri Tehrani, Yousef/Medical Physics
> Sent: Thursday, January 12, 2006 3:05 PM
> To: [hidden email]
> Subject: ROI analysis of image stack
>
> A question regarding ROI analysis of Image Stack:
>
> I would like to draw ROI's, slice-by-slice, on an image stack and then
> convert to mask (i.e. fill inside, clear outside).
> Is there a plugin, or batch mode way to do this?
>
> Also, when using multi measure plugin, the slice number is not recorded,
> and hence the slice location of each ROI is subsequently lost. Is there
> a way to register the slice for each ROI and retrieve later?
>
> Thanks
> Yousef
>
>
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