Batch Processing

Posted by Dan Siler on Oct 17, 2005; 1:33pm
URL: http://imagej.273.s1.nabble.com/Batch-Processing-tp3704661.html

Batch Processing

Can someone please help with the following macro or plugin?

Background

I am using the following

Windows XP
ImageJ 1.35d
Java 1.5.0_03
1536 X 1024 16-bit tif gray scale images
Processing 10 to 120 images at a time

Required Steps

1) Find Directory where images are located
2) Choose all (or some of images if possible) of images to be
processed
3) Find Directory where Dark images are located
4) Choose Dark image to be used for processing
5) Subtract Dark image from each image
6) Apply Median Filter to each image (Radius 3.0 pixels)
7) Apply WCIF Pseudo-flat field plugin (Mean filter kernel size 10.0)
8) Choose to invert image (yes or no)
9) If yes invert images
10) Convert images to 16-bit tif
11) Save processed images

This could be one or more macros.


Thanks