Re: MRI: Plugins, Tips and Data

Posted by Dianne Patterson on Aug 22, 2005; 10:03pm
URL: http://imagej.273.s1.nabble.com/MRI-Plugins-Tips-and-Data-tp3704996p3704999.html

You described it perfectly.

-D

Dianne K. Patterson Ph.D.
Psychology, Room 217E
[phone]
Cognition and NeuroImaging Labs
University of Arizona
Tucson, AZ


Quoting Anita Ramani <[hidden email]>:

> Dianne,
> How do you use ImageJ for manual skull stripping?  We usually trace around
> the image and do...Edit..."Clear Outside".  Please elaborate on how you use
> ImageJ for identifying white matter hyperintensities.
> Thanks,
> Anita
>
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]]On Behalf Of Dianne
> Patterson
> Sent: Monday, August 22, 2005 1:00 PM
> To: [hidden email]
> Subject: Re: MRI: Plugins, Tips and Data
>
> For what it's worth, we use the read and write analyze plugin...we have used
> ImageJ for manual skull stripping and identifying white matter
> hyperintensities.
>
> -Dianne
>
> Dianne K. Patterson Ph.D.
> Psychology, Room 217E
> [phone]
> Cognition and NeuroImaging Labs
> University of Arizona
> Tucson, AZ
>
>
> Quoting "McAuley, Grant (LLU)" <[hidden email]>:
>
>> I am a graduate student interested in MRI post-processing.  I am new
>> both to this area and ImageJ, but am an experienced Java programmer.  I
>> am wondering:
>>
>> 1) What kinds of MRI processing have people done with ImageJ, and what
>> kinds of things are possible?
>> 2) What plugins might I need/try?
>> 3) Where might I find some sample MRI data?
>>
>> Any info, tips or links would be appreciated.