Posted by
J. Anthony Parker on
Jul 27, 2005; 10:10pm
URL: http://imagej.273.s1.nabble.com/stack-alignment-registration-tp3705155p3705156.html
Michael,
Align3_TP,
http://www.med.harvard.edu/JPNM/ij/plugins/Align3TP.html,
allows the user to do 3D alignment as a sequence of 2D operations.
The alignment is an affine transform. It is primarily meant to be
used for manual registration, but I started to play a bit with
automatic registration including 3D. Unfortunately, I got distracted
by other tasks, and the automatic registration is not very user
friendly. The manual registrations is slightly more user friendly.
Tony
J. Anthony Parker, MD PhD
[hidden email]
tel 617 667-5250 fax -2185 comp -5275
page 617 632-7243 #31978
330 Brookline Ave, Boston, MA, 02215-5400
On Jul 27, 2005, at 4:11 PM, Michael Calhoun wrote:
> Hi. Seems like this problem has been around for awhile, but I
> couldn't find a solution in the software/plug-ins. We would like
> to register 3D imagery taken over multiple days, with the first
> stack as a reference. We have readily identifiable fiduciary
> points, and only need a linear transform (but it needs to be able
> to translate/rotate in full 3D, not slice by slice as the data also
> 'tilts'). Any free (!) suggestions? Thanks & cheers,
>
> -Michael
>
> _______________________________________________________
> Michael E. Calhoun, Ph.D.
> Department of Cellular Neurology
> Hertie-Institute for Clinical Brain Research
> University of Tübingen
> Otfried-Müller-Str. 27
> D-72076 Tübingen
> Germany
>
> Phone xx49-7071-29-87607
> Fax xx49-7071-29-4521
>
http://www.hih-tuebingen.de/imaging.html>