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Re: stack alignment / registration

Posted by Abramoff-Michael on Jul 27, 2005; 9:24pm
URL: http://imagej.273.s1.nabble.com/stack-alignment-registration-tp3705155p3705157.html

Yes, MI 3D registration has been around for awhile but to my knowledge it has not been implemented as a plugin (lack of people needing it). The BIJ library contains everything you might need including 3D joint histograms, minimization algorithms and 3D linear transformation. But you are on your own in putting it together and testing.

Sorry, Michael Abramoff

Michael D. Abràmoff, MD, PhD
Assistant Professor of Clinical Ophthalmology / Assistant Professor of Electrical and Computer Engineering
Department of Ophthalmology and Visual Sciences
University of Iowa Hospital and Clinics, PFP 11290C
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-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Michael Calhoun
Sent: Wednesday, July 27, 2005 3:11 PM
To: [hidden email]
Subject: stack alignment / registration

Hi.  Seems like this problem has been around for awhile, but I couldn't find a solution in the software/plug-ins.  We would like to register 3D imagery taken over multiple days, with the first stack as a reference.  
We have readily identifiable fiduciary points, and only need a linear transform (but it needs to be able to translate/rotate in full 3D, not slice by slice as the data also 'tilts').  Any free (!) suggestions?  
Thanks & cheers,

-Michael

_______________________________________________________
Michael E. Calhoun, Ph.D.
Department of Cellular Neurology
Hertie-Institute for Clinical Brain Research University of Tübingen Otfried-Müller-Str. 27
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