Posted by
Abramoff-Michael on
Jul 27, 2005; 9:24pm
URL: http://imagej.273.s1.nabble.com/stack-alignment-registration-tp3705155p3705157.html
Yes, MI 3D registration has been around for awhile but to my knowledge it has not been implemented as a plugin (lack of people needing it). The BIJ library contains everything you might need including 3D joint histograms, minimization algorithms and 3D linear transformation. But you are on your own in putting it together and testing.
Sorry, Michael Abramoff
Michael D. Abràmoff, MD, PhD
Assistant Professor of Clinical Ophthalmology / Assistant Professor of Electrical and Computer Engineering
Department of Ophthalmology and Visual Sciences
University of Iowa Hospital and Clinics, PFP 11290C
200 Hawkins Drive Iowa City, IA 52242
USA
Tel: +1 319 384 5833. Secretary Val Bell: +1 319 356 3938.
Skype michael-abramoff
[hidden email]
-----Original Message-----
From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of Michael Calhoun
Sent: Wednesday, July 27, 2005 3:11 PM
To:
[hidden email]
Subject: stack alignment / registration
Hi. Seems like this problem has been around for awhile, but I couldn't find a solution in the software/plug-ins. We would like to register 3D imagery taken over multiple days, with the first stack as a reference.
We have readily identifiable fiduciary points, and only need a linear transform (but it needs to be able to translate/rotate in full 3D, not slice by slice as the data also 'tilts'). Any free (!) suggestions?
Thanks & cheers,
-Michael
_______________________________________________________
Michael E. Calhoun, Ph.D.
Department of Cellular Neurology
Hertie-Institute for Clinical Brain Research University of Tübingen Otfried-Müller-Str. 27
D-72076 Tübingen
Germany
Phone xx49-7071-29-87607
Fax xx49-7071-29-4521
http://www.hih-tuebingen.de/imaging.html