Re: Apply "Substract background" to all files in subfolders

Posted by John Bradley on
URL: http://imagej.273.s1.nabble.com/Apply-Substract-background-to-all-files-in-subfolders-tp3705174p3705192.html

Dominik,
 I wanted to do the same procedure as you describe. I couldn't get ImageJ to
do it so I tried Metamorph (Universal Imaging) - it doesn't have this
functionality either. My solution was Photoshop with Fovea3 plug-ins
(Reindeer graphics: http://www.reindeergraphics.com/free.shtml). Record the
process you wish to automate using 'Actions', then under the File menu
choose 'Process' and then 'Batch'. In the dialogue box click the checkbox
for 'include subdirectories'.
 If anyone knows of a macro for ImageJ that will process through all
subdirectories I too would be very interested.
 Cheers, John
       -------------------
John Bradley
Scientist, Morphology
Eyetech Pharmaceuticals, Inc.
Eyetech Research Center
35 Hartwell Avenue
Lexington, MA. 02421-3102
Tel. [phone]
Fax: [phone]
[hidden email]
www.eyetech.com <http://www.eyetech.com>
     On 7/20/05, Dominik Geisel <[hidden email]> wrote:

>
> Hi all!
>
> I want to apply the "Process -> Subtract Background" to all files in
> multiple subfolders automatically. Working with stacks brings up RAM
> problems and is just for one folder - so is there a smarter and faster
> way?
>
> Thank you very much!
> Dominik
>

--
-------------------
John Bradley
Scientist, Morphology
Eyetech Pharmaceuticals, Inc.
Eyetech Research Center
35 Hartwell Avenue
Lexington, MA. 02421-3102
Tel. [phone]
Fax: [phone]
[hidden email]
www.eyetech.com <http://www.eyetech.com/>