Re: Opening a File with ImageJ - Exception message

Posted by Carlos Alberto Perez on Apr 04, 2012; 6:41pm
URL: http://imagej.273.s1.nabble.com/Opening-a-File-with-ImageJ-Exception-message-tp4687152p4687394.html

Hi all,
Thank you to all for a quick answer giving me support to this problem. I
installed the LOCI plugins as was suggested by many of you and it was
possible to open the file using bio-formats.
Regards,
Carlos


Carlos A. Pérez, PhD
X-Ray Fluorescence and Absorption Group
LNLS -Brazilian Synchrotron Light Source Laboratory
http://www.lnls.br
Phone: [phone]
Fax: [phone]
Mail address:
Caixa Postal 6192
CEP 13083-970
Campinas - SP, Brazil



-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Curtis
Rueden
Sent: quarta-feira, 4 de abril de 2012 14:56
To: [hidden email]
Subject: Re: Opening a File with ImageJ - Exception message

Hi Carlos,

An exception message appears when I try to open a particular tif file with
>
 ImageJ. It is an image of 16Mb in size.
>

Depending on the file format, a different plugin will be used to open. So it
is not clear which plugin is emitting the error message you are seeing.

Did you try opening with the Bio-Formats Importer plugin?

If you install the Fiji distribution of ImageJ (http://fiji.sc/) Bio-Formats
is bundled with it. Otherwise, you can download it yourself:
http://loci.wisc.edu/bio-formats/imagej

Using Bio-Formats, you should at least get a more informative error message
if there is a problem. Feel free to reply back to the list with more details
if you continue to have trouble.

Regards,
Curtis


On Wed, Apr 4, 2012 at 12:06 PM, Carlos Alberto Perez <[hidden email]> wrote:

> Hello everyone,
>
> An exception message appears when I try to open a particular tif file
> with ImageJ. It is an image of 16Mb in size. O popup window appears
> with the following message:
>
>
>
> “java.lang.ArrayIndexOutOfBoundsException”
>
>
>
> Does anyone may explain me what kind of problem is this and if I can
> fix it.
>
> Thank you in advance
>
> Carlos.
>
>
>
> Carlos A. Pérez, PhD
>
> X-Ray Fluorescence and Absorption Group
>
> LNLS -Brazilian Synchrotron Light Source Laboratory
>
> http://www.lnls.br
>
> Phone: [phone]
>
> Fax: [phone]
>
> Mail address:
> Caixa Postal 6192
> CEP 13083-970
> Campinas - SP, Brazil
>
>
>
>
>