Posted by
Thomas Boudier on
URL: http://imagej.273.s1.nabble.com/Drawing-3D-rois-tp5000564p5000585.html
Hi,
here a simple macro that reads the rois (assuming one per slice) and
draws the mask in a new image.
w=getWidth();
h=getHeight();
s=nSlices();
newImage("Mask", "8-bit Black", w, h, s);
setForegroundColor(255, 255, 255);
nb=roiManager("count");
for(i=0;i<nb;i++) {
roiManager("Select",i);
run("Fill", "slice");
}
Thomas
Le 29/10/2012 17:29, m_a_x a écrit :
> Thank you for you quick reply! I tried the segmentation editor but it doesnt
> work fine for me. When I use it, a new window opens with black slices where
> the 3D roi occurs after drawing it. Unfortunately the 3D manager cant
> analyze the grey values of those slices as they are all black. I think there
> is a simple solution for that problem but I dont get it. Can you please help
> me with that?
> Thank you very much!
>
> Max
>
>
>
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Thomas Boudier, MCU Université Pierre et Marie Curie,
Modélisation Cellulaire et Imagerie Biologique (EE1),
IFR 83, Bat B 7ème étage, porte 723, Campus Jussieu.
Tel : 01 44 27 46 92 Fax : 01 44 27 22 91
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