help with Batch Merge of 2-channel image sequence

Posted by Jeremy Florman on Dec 20, 2012; 10:01pm
URL: http://imagej.273.s1.nabble.com/help-with-Batch-Merge-of-2-channel-image-sequence-tp5001242.html

I have a large data set of two channel tiff images that I would like to merge. I've been trying to find/write a plugin to facilitate this and the batchRGBmerge macro seems to be just what I'm looking for but I am running into trouble due to the fact that my images are 2-channel rather than 3-channel. My filenames have the suffix w1.tif (blue) and w2.tif (green) but I've been unable to get the batchRGB merge to recognize these suffixes or run with multiples of 2. If anyone could help me here or suggest an existing plugin/macro to accomplish this it would be greatly appreciated.

Jeremy Florman
Neurobiology Department
Umass Medical School

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