http://imagej.273.s1.nabble.com/how-can-I-call-execute-run-a-trained-weka-classifier-from-an-ImageJ-macro-tp5001668p5001681.html
of the plugin. Please, update Fiji and let me know if it works as expected.
> @Kota
> Thanks you very much for your quick response! I was aware of this
> functionality and link that you have suggested and I have been using it
> extensively. Even if I thought your reply did not directly address my
> problem, it made me have a second look and I managed to solve the issue. I
> am grateful!
>
>
> @Ignacio
>
> Hello again!
>
> Yes, the command works fine in the terminal, when properly formatted, of
> course. I even tried the simple:
>
> exec("java", "-version");
>
> and that doesn't work either! There must be something wrong when calling
> java. Unfortunately, there is absolutely no feedback, so I cannot
> investigate it further. Python code and any other executable on my system
> does work though.
>
> Ignacio, I would like to take this opportunity and inform you of a bug in
> AWS. In the past, I had tried many times loading a trained classifier into
> AWS that used a reduced feature vector (after attribute selection in weka
> explorer). The classifiers would load successfully, but after feature
> calculation the classifier would fail/crash to classify the image(s).
> Today, after Kota's suggestion, I accidentally found that if any of the
> "Structure" features exist in the final feature vector will cause the
> classifier to crash when applying the classification to the images. These
> classifiers are working normally, though, when applied within the weka
> explorer.
>
> I am attaching the corresponding log file. After the last lines are logged
> a pop up message appears saying "Could not apply Classifier!". I have the
> impression, but I cannot confirm that this might happen to classifiers with
> non-reduced feature vectors as long as "Structure" and maybe "Entropy"
> features are used. This issue has been bugging me for some time now and I
> have made all sorts of workarounds to try to avoid it. I hope you can
> resolve it.
>
> Thanks!
>
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http://imagej.nih.gov/ij/list.html>
> Loading Weka classifier from /home/mobile/Desktop/cnh
> data/3class-mogtip-11feat-ranfor10-classifier-20130103b.model...
> Field of view: max sigma = 16.0, min sigma = 8.0
> Membrane thickness: 1, patch size: 19
> Read class name: mog-tips
> Read class name: corn
> Read class name: background
> Read header from /home/mobile/Desktop/cnh
> data/3class-mogtip-11feat-ranfor10-classifier-20130103b.model (number of
> attributes = 11)
> Loaded /home/mobile/Desktop/cnh
> data/3class-mogtip-11feat-ranfor10-classifier-20130103b.model
> Processing 2 image files in 2 thread(s)....
> Processing image image051.bmp in thread 0
> Processing slices of image051.bmp in 1 thread(s)...
> Starting thread 0 processing 1 slices, starting with 1
> Processing image image052.bmp in thread 1
> Processing slices of image052.bmp in 1 thread(s)...
> Starting thread 0 processing 1 slices, starting with 1
> Creating features for slice 1...
> Creating features for slice 1...
> Filtering feature stack by selected attributes...
> Filtering feature stack by selected attributes...
> Classifying slice 1 in 1 thread(s)...
> Classifying slice 1 in 1 thread(s)...
>
>
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
>