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Re: VSI Reader, new version

Posted by ctrueden on Mar 05, 2013; 7:22pm
URL: http://imagej.273.s1.nabble.com/VSI-Reader-new-version-tp5002009p5002012.html

Hi Oli,

> We've added an Update Site for our platform containing the macro

Excellent, looks great! Your mail inspired me to create a page on the Fiji
wiki listing all known available update sites:

http://fiji.sc/List_of_update_sites

If anyone has an update site missing from the list, feel free to add it, or
let me know and I can do it.

In the future, we will have ImageJ2 parse this list and create a nice GUI
directly within ImageJ so that users can more easily turn on update sites
by clicking them.

Regards,
Curtis


On Tue, Mar 5, 2013 at 10:14 AM, Burri Olivier <[hidden email]>wrote:

> Dear List,
> We've made a few updates to the reader for Olympus VSI Files
> For the more info and documentation, please visit
> http://biop.epfl.ch/INFO_completed_projects.html#vsi-reader
> Updates include:
>
>
> -          Proper bit depth is taken when downsampling images.
>
>
> -          We can now fairly accurately read labels, masks, overview scans
> from the images. This is still based on empirical formulas to recognize
> which files are which, so if you have some troublesome files, feel free to
> let us know. When the great team at BioFormats manages to parse the
> metadata from the SVI files directly, we'll make sure to modify our macro
> accordingly.
>
>
> -          We've added an Update Site for our platform containing the
> macro, as per Johannes's suggestion.
> host: http://biop.epfl.ch/Fiji-Update,
> Latest versions will still be available through our website as .zip
> downloads, but if you want to keep up with the latest modifications, you
> can add an update site for our platform to the Fiji Updater, see
> instructions at
> http://fiji.sc/wiki/index.php/How_to_follow_a_3rd_party_update_site
> The only issue we have is regarding the icons used for the actionbar
> buttons: There is an incompatibility between Fiji's Updater and the
> ActionBar plugin that does not allow for the upload of the icons to the
> update site. In the meantime, you can get the icons separately on our
> website if you really want them :). Note that once the icons are installed,
> the update site is enough, as the only thing that will change is the .ijm
> file.
>
> -          So far we've had no more issues with the latest LOCI
> installations so hopefully this is a thing of the past and it should run
> 'out of the box'.
>
> All the best,
>
> Oli
>
>
> Olivier Burri
> Engineer - Image Processing
> & Software Development
> EPFL - SV - PTECH - PTBIOP
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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