Posted by
dscho on
URL: http://imagej.273.s1.nabble.com/Trainable-Segmentation-tp5002107p5002112.html
Hi Bob,
On Mon, 11 Mar 2013, Bob wrote:
> Recently the Trainable Segmentation plugin in FIJI was mentioned in
> another thread. It looks very interesting for one of my applications.
> Is it available as a plugin for ImageJ? If so, where can I download the
> .jar? Are there other plug-ins that it depends on that I’d also need?
The easiest way to get it is to install Fiji:
http://fiji.sc/As Fiji is just ImageJ (i.e. a distribution of ImageJ including many
useful plugins), of course it would be possible to copy a number of .jar
files into your existing ImageJ directory.
To identify those you would have to inspect the "Dependencies" section of
the advanced mode of Help>Update Fiji recursively, or the respective
pom.xml files in the source code repository.
However, it would still run the risk of incompatible .jar versions and it
would be hard to keep everything up-to-date.
The latter point being addressed by Fiji -- a lot of hard work by really
smart people was put into that! -- I fail to see any value in spending a
substantial effort on ripping the Trainable Segmentation out of Fiji just
to be able to install it in a possibly incompatible ImageJ version...
Remember: Fiji is not competing with ImageJ. It is just a community
project to contribute improvements primarily relevant to life science to
ImageJ. An important offshoot is the updater and dependency management.
Try to benefit from our hard work, please.
Ciao,
Johannes
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