Re: Trainable Segmentation

Posted by dscho on
URL: http://imagej.273.s1.nabble.com/Trainable-Segmentation-tp5002107p5002482.html

Hi,

On Thu, 28 Mar 2013, chin wrote:

> I recently tried  the Advanced Weka Segmentation (like the Trainable
> Segmentation) plugin on IHC stained images. It really an intuitive tool
> and easily let me get up to speed on it. The only thing  perplexed my
> colleagues and me is we all ImageJ users. So, both ImageJ and Fiji are
> installed on my PCs. Many of us biologists are not programers  and don't
> even know java language, not to mention the ability to put all the
> dependencies from the Fiji repository into ImageJ. Yeah, Fiji is just
> ImageJ. It's strange that plugins for ImageJ could also be used on Fiji
> while some plugins created for Fiji which do not work on ImageJ. We are
> very thankful for both useful tools ImageJ and Fiji. As far as we are
> concerned, why does tailor-made plugins for Fiji could not be moved into
> ImageJ. Thanks to a standalone Stitching plugin for ImageJ made by Dr.
> Stephan Preibisch. It let us could do image stitching on ImageJ
> platform.

You make it sound like Fiji is something different from ImageJ. It is not.
It's just that Fiji is a distribution of ImageJ that comes with a lot of
plugins preinstalled, kind of a "no hassles" ImageJ.

If you are knowledgable about the details of ImageJ, such as: where do I
install which .jar files (and how do I find out which ones I need?), you
can easily copy the relevant files from
http://jenkins.imagej.net/job/Stable-Fiji/. If not: use Fiji.

Ciao,
Johannes

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